Pseudomonas protegens Pf-5, PFL_1935

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_1935
Name
Replicon	chromosome
Genomic location	2157982 - 2159736 (+ strand)

Cross-References

RefSeq	YP_259054.2
GI	346642849
Entrez	3477567
INSDC	AAY91222.2
NCBI Locus Tag	PFL_1935
UniParc	UPI000219FF50
UniProtKB Acc	Q4KFC9
UniProtKB ID	Q4KFC9_PSEF5
UniRef100	UniRef100_Q4KFC9
UniRef50	UniRef50_D7HY21
UniRef90	UniRef90_Q4KFC9

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter permease/ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	7.59
Kyte-Doolittle Hydrophobicity Value	0.318
Molecular Weight (kDa)	63.7
Isoelectric Point (pI)	9.33

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001073 (497 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_1935 Search term: ABC transporter permease/ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000355637 ATP binding cassette subfamily B member 10 [Source:HGNC Symbol;Acc:HGNC:41] E-value: 1.3e-88 Percent Identity: 37.1

References