Pseudomonas protegens Pf-5, PFL_2002

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_2002
Name
Replicon chromosome
Genomic location 2227882 - 2228472 (+ strand)

Cross-References

RefSeq YP_259121.2
GI 346642858
Entrez 3476431
INSDC AAY91288.2
NCBI Locus Tag PFL_2002
UniParc UPI000219FEE3
UniProtKB Acc Q4KF62
UniProtKB ID Q4KF62_PSEF5
UniRef100 UniRef100_Q4KF62
UniRef50 UniRef50_Q88IE8
UniRef90 UniRef90_Q4KF62

Product

Feature Type CDS
Coding Frame 1
Product Name
phage baseplate assembly V family protein
Synonyms
Evidence for Translation
Charge (pH 7) -1.36
Kyte-Doolittle Hydrophobicity Value -0.149
Molecular Weight (kDa) 20230.4
Isoelectric Point (pI) 6.63

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 59 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000599 (300 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_2002

Human Homologs

References

No references are associated with this feature.