Pseudomonas protegens Pf-5, PFL_2013

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_2013
Name
Replicon chromosome
Genomic location 2234851 - 2237418 (+ strand)

Cross-References

RefSeq YP_259132.1
GI 70729394
Entrez 3475857
INSDC AAY91299.1
NCBI Locus Tag PFL_2013
UniParc UPI000054D311
UniProtKB Acc Q4KF51
UniProtKB ID Q4KF51_PSEF5
UniRef100 UniRef100_Q4KF51
UniRef50 UniRef50_Q4KF51
UniRef90 UniRef90_Q4KF51

Product

Feature Type CDS
Coding Frame 1
Product Name
phage tail tape measure protein, TP901 family
Synonyms
Evidence for Translation
Charge (pH 7) 29.48
Kyte-Doolittle Hydrophobicity Value -0.125
Molecular Weight (kDa) 88147.7
Isoelectric Point (pI) 10.38

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 32 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000608 (306 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_2013

Human Homologs

References

No references are associated with this feature.