Pseudomonas protegens Pf-5, PFL_2660

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_2660
Name
Replicon chromosome
Genomic location 2940407 - 2941687 (+ strand)

Cross-References

RefSeq YP_259767.1
GI 70730028
Entrez 3476588
INSDC AAY91933.1
NCBI Locus Tag PFL_2660
UniParc UPI000054D583
UniProtKB Acc Q4KDB6
UniProtKB ID Q4KDB6_PSEF5
UniRef100 UniRef100_Q4KDB6
UniRef50 UniRef50_Q5P2I3
UniRef90 UniRef90_Q4KDB6

Product

Feature Type CDS
Coding Frame 1
Product Name
TRAP C4-dicarboxylate transport system permease DctM
Synonyms
Evidence for Translation
Charge (pH 7) 3.79
Kyte-Doolittle Hydrophobicity Value 1.251
Molecular Weight (kDa) 45.1
Isoelectric Point (pI) 8.46

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 333 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000853 (789 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_2660

Human Homologs

References

No references are associated with this feature.