Pseudomonas protegens Pf-5, PFL_4423 (cobC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4423
Name
cobC
Replicon chromosome
Genomic location 5133009 - 5133584 (- strand)

Cross-References

RefSeq YP_261511.1
GI 70731769
EC Number 3.1.3.73
Entrez 3478542
INSDC AAY93674.1
NCBI Locus Tag PFL_4423
UniParc UPI000054DC35
UniProtKB Acc Q4K8C2
UniProtKB ID Q4K8C2_PSEF5
UniRef100 UniRef100_Q4K8C2
UniRef50 UniRef50_G8Q5K0
UniRef90 UniRef90_Q4K8C2

Product

Feature Type CDS
Coding Frame 1
Product Name
alpha-ribazole-5'-phosphate phosphatase
Synonyms
Evidence for Translation
Charge (pH 7) -6.34
Kyte-Doolittle Hydrophobicity Value -0.142
Molecular Weight (kDa) 20944.7
Isoelectric Point (pI) 4.73

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 423 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001227 (529 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4423
Search term: cobC

Human Homologs

References

No references are associated with this feature.