Pseudomonas protegens Pf-5, PFL_4463 (ttcA)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_4463
Name	ttcA
Replicon	chromosome
Genomic location	5173156 - 5173980 (- strand)

Cross-References

RefSeq	YP_261551.2
GI	346643144
Entrez	3478582
INSDC	AAY93714.2
NCBI Locus Tag	PFL_4463
UniParc	UPI00017BE8F6
UniProtKB Acc	Q4K882
UniProtKB ID	TTCA_PSEF5
UniRef100	UniRef100_Q4K882
UniRef50	UniRef50_Q885Z7
UniRef90	UniRef90_Q885Z7

Product

Feature Type	CDS
Coding Frame	1
Product Name	tRNA 2-thiocytidine biosynthesis protein TtcA
Synonyms
Evidence for Translation
Charge (pH 7)	0.02
Kyte-Doolittle Hydrophobicity Value	-0.261
Molecular Weight (kDa)	31087.7
Isoelectric Point (pI)	7.01

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 407 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001150 (540 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_4463 Search term: ttcA Search term: tRNA 2-thiocytidine biosynthesis protein TtcA

Human Homologs

References