Pseudomonas protegens Pf-5, PFL_4468

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4468
Name
Replicon chromosome
Genomic location 5178548 - 5179546 (+ strand)

Cross-References

RefSeq YP_261556.2
GI 346643146
Entrez 3478587
INSDC AAY93719.2
NCBI Locus Tag PFL_4468
UniParc UPI00021A006C
UniProtKB Acc Q4K877
UniProtKB ID Q4K877_PSEF5
UniRef100 UniRef100_Q4K877
UniRef50 UniRef50_Q4K877
UniRef90 UniRef90_Q4K877

Product

Feature Type CDS
Coding Frame 1
Product Name
AraC family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 2.74
Kyte-Doolittle Hydrophobicity Value -0.512
Molecular Weight (kDa) 38524.4
Isoelectric Point (pI) 7.50

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 231 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001140 (924 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4468

Human Homologs

References

No references are associated with this feature.