Pseudomonas protegens Pf-5, PFL_4505 (lysC)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_4505
Name	lysC
Replicon	chromosome
Genomic location	5214280 - 5215521 (- strand)

Cross-References

RefSeq	YP_261589.1
GI	70731847
EC Number	2.7.2.4
Entrez	3478620
INSDC	AAY93752.1
NCBI Locus Tag	PFL_4505
UniParc	UPI000054DC81
UniProtKB Acc	Q4K844
UniProtKB ID	Q4K844_PSEF5
UniRef100	UniRef100_Q4K844
UniRef50	UniRef50_A4VJB4
UniRef90	UniRef90_A4VJB4

Product

Feature Type	CDS
Coding Frame	1
Product Name	aspartate kinase
Synonyms
Evidence for Translation
Charge (pH 7)	-11.32
Kyte-Doolittle Hydrophobicity Value	0.003
Molecular Weight (kDa)	44.6
Isoelectric Point (pI)	4.94

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
5YEI	TRANSFERASE	09/17/17	Mechanistic insight into the regulation of Pseudomonas aeruginosa aspartate kinase	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	2.301	X-RAY DIFFRACTION	90.8

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 638 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000871 (530 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_4505 Search term: lysC Search term: aspartate kinase

Human Homologs

References