Pseudomonas protegens Pf-5, PFL_4506 (alaS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4506
Name
alaS
Replicon chromosome
Genomic location 5215619 - 5218243 (- strand)

Cross-References

RefSeq YP_261590.1
GI 70731848
EC Number 6.1.1.7
Entrez 3478621
INSDC AAY93753.1
NCBI Locus Tag PFL_4506
UniParc UPI000054DC82
UniProtKB Acc Q4K843
UniProtKB ID SYA_PSEF5
UniRef100 UniRef100_Q4K843
UniRef50 UniRef50_Q6D1T0
UniRef90 UniRef90_Q4ZQI4

Product

Feature Type CDS
Coding Frame 1
Product Name
alanyl-tRNA synthetase
Synonyms
Evidence for Translation
Charge (pH 7) -20.91
Kyte-Doolittle Hydrophobicity Value -0.216
Molecular Weight (kDa) 94567.1
Isoelectric Point (pI) 5.34

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 667 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000870 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4506
Search term: alaS

Human Homologs

Ensembl 110, assembly GRCh38.p14
alanyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:20]
E-value: 3.8e-132
Percent Identity: 39.1

References

No references are associated with this feature.