Pseudomonas protegens Pf-5, PFL_4770

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_4770
Name
Replicon	chromosome
Genomic location	5507230 - 5507835 (+ strand)

Cross-References

RefSeq	YP_261851.1
GI	70732095
Entrez	3479181
INSDC	AAY94000.1
NCBI Locus Tag	PFL_4770
UniParc	UPI000054DD87
UniProtKB Acc	Q4K7D2
UniProtKB ID	Q4K7D2_PSEF5
UniRef100	UniRef100_Q4K7D2
UniRef50	UniRef50_C3JYT6
UniRef90	UniRef90_C3JYT6

Product

Feature Type	CDS
Coding Frame	1
Product Name	cold-shock DNA-binding domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7)	5.42
Kyte-Doolittle Hydrophobicity Value	0.479
Molecular Weight (kDa)	21.9
Isoelectric Point (pI)	9.99

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 488 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000926 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_4770 Search term: cold-shock DNA-binding domain-containing protein

Human Homologs

References