Pseudomonas protegens Pf-5, PFL_4906

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4906
Name
Replicon chromosome
Genomic location 5647927 - 5649348 (- strand)

Cross-References

RefSeq YP_261987.1
GI 70732231
Entrez 3479317
INSDC AAY94136.1
NCBI Locus Tag PFL_4906
UniParc UPI000054DE0E
UniProtKB Acc Q4K6Z6
UniProtKB ID Q4K6Z6_PSEF5
UniRef100 UniRef100_Q4K6Z6
UniRef50 UniRef50_O34618
UniRef90 UniRef90_E2XM80

Product

Feature Type CDS
Coding Frame 1
Product Name
permease
Synonyms
Evidence for Translation
Charge (pH 7) 11.85
Kyte-Doolittle Hydrophobicity Value 0.789
Molecular Weight (kDa) 51165.5
Isoelectric Point (pI) 9.87

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 423 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000219 (3043 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4906
Search term: permease

Human Homologs

Ensembl 110, assembly GRCh38.p14
solute carrier family 7 member 14 [Source:HGNC Symbol;Acc:HGNC:29326]
E-value: 2.5e-21
Percent Identity: 26.1

References

No references are associated with this feature.