Pseudomonas protegens Pf-5, PFL_4993

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4993
Name
Replicon chromosome
Genomic location 5753548 - 5754903 (- strand)

Cross-References

RefSeq YP_262072.2
GI 346643199
Entrez 3479403
INSDC AAY94221.2
NCBI Locus Tag PFL_4993
UniParc UPI00021A0055
UniProtKB Acc Q4K6R1
UniProtKB ID Q4K6R1_PSEF5
UniRef100 UniRef100_Q4K6R1
UniRef50 UniRef50_L8MDN1
UniRef90 UniRef90_Q4K6R1

Product

Feature Type CDS
Coding Frame 1
Product Name
OprD family outer membrane porin
Synonyms
Evidence for Translation
Charge (pH 7) 4.64
Kyte-Doolittle Hydrophobicity Value -0.512
Molecular Weight (kDa) 50264.4
Isoelectric Point (pI) 8.83

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 14 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000187 (1579 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4993

Human Homologs

References

No references are associated with this feature.