Pseudomonas protegens Pf-5, PFL_5175

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5175
Name
Replicon chromosome
Genomic location 5936215 - 5937135 (+ strand)

Cross-References

RefSeq YP_262253.1
GI 70732490
Entrez 3479577
INSDC AAY94395.1
NCBI Locus Tag PFL_5175
UniParc UPI000054DF18
UniProtKB Acc Q4K680
UniProtKB ID Q4K680_PSEF5
UniRef100 UniRef100_Q4K680
UniRef50 UniRef50_B9NYA0
UniRef90 UniRef90_Q4K680

Product

Feature Type CDS
Coding Frame 1
Product Name
polyamine ABC transporter permease
Synonyms
Evidence for Translation
Charge (pH 7) 9.67
Kyte-Doolittle Hydrophobicity Value 0.754
Molecular Weight (kDa) 33.5
Isoelectric Point (pI) 10.16

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 466 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000204 (418 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5175

Human Homologs

References

No references are associated with this feature.