Pseudomonas protegens Pf-5, PFL_5176

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5176
Name
Replicon chromosome
Genomic location 5937135 - 5937941 (+ strand)

Cross-References

RefSeq YP_262254.1
GI 70732491
Entrez 3479578
INSDC AAY94396.1
NCBI Locus Tag PFL_5176
UniParc UPI000054DF19
UniProtKB Acc Q4K679
UniProtKB ID Q4K679_PSEF5
UniRef100 UniRef100_Q4K679
UniRef50 UniRef50_Q9I6T4
UniRef90 UniRef90_Q4K679

Product

Feature Type CDS
Coding Frame 1
Product Name
polyamine ABC transporter permease
Synonyms
Evidence for Translation
Charge (pH 7) 8.64
Kyte-Doolittle Hydrophobicity Value 0.898
Molecular Weight (kDa) 28772.0
Isoelectric Point (pI) 10.08

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 506 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000203 (424 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5176

Human Homologs

References

No references are associated with this feature.