Pseudomonas protegens Pf-5, PFL_5616

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_5616
Name
Replicon	chromosome
Genomic location	6397562 - 6397900 (+ strand)

Cross-References

RefSeq	YP_262675.1
GI	70732904
Entrez	3479991
INSDC	AAY94809.1
NCBI Locus Tag	PFL_5616
UniParc	UPI000054E0B1
UniProtKB Acc	Q4K508
UniProtKB ID	Q4K508_PSEF5
UniRef100	UniRef100_Q4K508
UniRef50	UniRef50_G8Q094
UniRef90	UniRef90_G8Q094

Product

Feature Type	CDS
Coding Frame	1
Product Name	histidine triad domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7)	-1.63
Kyte-Doolittle Hydrophobicity Value	-0.240
Molecular Weight (kDa)	12.8
Isoelectric Point (pI)	6.50

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 640 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000635 (884 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_5616 Search term: histidine triad domain-containing protein

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000304229 histidine triad nucleotide binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4912] E-value: 1.6e-35 Percent Identity: 57.7

References