Pseudomonas protegens Pf-5, PFL_5621 (trpC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5621
Name
trpC
Replicon chromosome
Genomic location 6400817 - 6401653 (- strand)

Cross-References

RefSeq YP_262680.1
GI 70732909
EC Number 4.1.1.48
Entrez 3479996
INSDC AAY94814.1
NCBI Locus Tag PFL_5621
UniParc UPI000054E0B6
UniProtKB Acc Q4K503
UniProtKB ID TRPC_PSEF5
UniRef100 UniRef100_Q4K503
UniRef50 UniRef50_P00911
UniRef90 UniRef90_Q4K503

Product

Feature Type CDS
Coding Frame 1
Product Name
indole-3-glycerol phosphate synthase
Synonyms
Evidence for Translation
Charge (pH 7) -9.60
Kyte-Doolittle Hydrophobicity Value 0.049
Molecular Weight (kDa) 30.3
Isoelectric Point (pI) 4.66

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 584 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000631 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5621
Search term: trpC

Human Homologs

References

No references are associated with this feature.