Pseudomonas protegens Pf-5, PFL_5820 (mdcA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5820
Name
mdcA
Replicon chromosome
Genomic location 6625665 - 6627341 (- strand)

Cross-References

RefSeq YP_262878.1
GI 70733105
Entrez 3480192
INSDC AAY95010.1
NCBI Locus Tag PFL_5820
UniParc UPI000054E177
UniProtKB Acc Q4K4F5
UniProtKB ID Q4K4F5_PSEF5
UniRef100 UniRef100_Q4K4F5
UniRef50 UniRef50_O06924
UniRef90 UniRef90_Q4K4F5

Product

Feature Type CDS
Coding Frame 1
Product Name
malonate decarboxylase subunit alpha
Synonyms
Evidence for Translation
Charge (pH 7) -5.49
Kyte-Doolittle Hydrophobicity Value -0.091
Molecular Weight (kDa) 61412.8
Isoelectric Point (pI) 6.36

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 59 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000207 (477 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5820
Search term: mdcA

Human Homologs

References

No references are associated with this feature.