Pseudomonas protegens Pf-5, PFL_5859

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5859
Name
Replicon chromosome
Genomic location 6663898 - 6665388 (+ strand)

Cross-References

RefSeq YP_262917.1
GI 70733144
EC Number 3.4.24.-
Entrez 3480231
INSDC AAY95049.1
NCBI Locus Tag PFL_5859
UniParc UPI000054E19E
UniProtKB Acc Q4K4B6
UniProtKB ID Q4K4B6_PSEF5
UniRef100 UniRef100_Q4K4B6
UniRef50 UniRef50_Q4K4B6
UniRef90 UniRef90_Q4K4B6

Product

Feature Type CDS
Coding Frame 1
Product Name
M16 family peptidase
Synonyms
Evidence for Translation
Charge (pH 7) -0.30
Kyte-Doolittle Hydrophobicity Value -0.144
Molecular Weight (kDa) 52543.5
Isoelectric Point (pI) 6.91

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3GWB HYDROLASE 03/31/09 Crystal structure of peptidase M16 inactive domain from Pseudomonas fluorescens. Northeast Structural Genomics target PlR293L Pseudomonas fluorescens 1.9 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 453 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000362 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5859

Human Homologs

References

No references are associated with this feature.