Pseudomonas protegens Pf-5, PFL_5900 (rppH)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5900
Name
rppH
Replicon chromosome
Genomic location 6711085 - 6711564 (- strand)

Cross-References

RefSeq YP_262958.1
GI 70733185
EC Number 3.6.1.-
Entrez 3480272
INSDC AAY95090.1
NCBI Locus Tag PFL_5900
UniParc UPI000054E1C7
UniProtKB Acc Q4K475
UniProtKB ID RPPH_PSEF5
UniRef100 UniRef100_Q4K475
UniRef50 UniRef50_A6UYD9
UniRef90 UniRef90_A6UYD9

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA pyrophosphohydrolase
Synonyms
Evidence for Translation
Charge (pH 7) 3.17
Kyte-Doolittle Hydrophobicity Value -0.574
Molecular Weight (kDa) 18.9
Isoelectric Point (pI) 9.13

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 263 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000328 (533 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5900
Search term: rppH

Human Homologs

References

No references are associated with this feature.