Pseudomonas protegens Pf-5, PFL_6087 (tssB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6087
Name
tssB
Replicon chromosome
Genomic location 6914043 - 6914558 (+ strand)

Cross-References

RefSeq YP_263145.1
GI 70733370
Entrez 3480457
INSDC AAY95275.1
NCBI Locus Tag PFL_6087
UniParc UPI000054E27E
UniProtKB Acc Q4K3N8
UniProtKB ID Q4K3N8_PSEF5
UniRef100 UniRef100_Q4K3N8
UniRef50 UniRef50_Q4K3N8
UniRef90 UniRef90_Q4K3N8

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion protein TssB
Synonyms
Evidence for Translation
Charge (pH 7) -4.76
Kyte-Doolittle Hydrophobicity Value -0.202
Molecular Weight (kDa) 18.7
Isoelectric Point (pI) 4.73

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5N8N STRUCTURAL PROTEIN 02/23/17 Contracted sheath of a Pseudomonas aeruginosa type six secretion system consisting of TssB1 and TssC1 Pseudomonas aeruginosa 3.28 ELECTRON MICROSCOPY 94.6
4UQZ PROTEIN TRANSPORT 06/25/14 Coevolution of the ATPase ClpV, the TssB-TssC Sheath and the Accessory HsiE Protein Distinguishes Two Type VI Secretion Classes PSEUDOMONAS AERUGINOSA PAO1 1.599 X-RAY DIFFRACTION 93.4

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 106 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000082 (1224 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6087
Search term: tssB

Human Homologs

References

No references are associated with this feature.