Pseudomonas protegens Pf-5, PFL_6088 (tssC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6088
Name
tssC
Replicon chromosome
Genomic location 6914575 - 6916068 (+ strand)

Cross-References

RefSeq YP_263146.1
GI 70733371
Entrez 3480458
INSDC AAY95276.1
NCBI Locus Tag PFL_6088
UniParc UPI000054E27F
UniProtKB Acc Q4K3N7
UniProtKB ID Q4K3N7_PSEF5
UniRef100 UniRef100_Q4K3N7
UniRef50 UniRef50_Q4K3N7
UniRef90 UniRef90_Q4K3N7

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion protein TssC
Synonyms
Evidence for Translation
Charge (pH 7) -12.27
Kyte-Doolittle Hydrophobicity Value -0.438
Molecular Weight (kDa) 55.6
Isoelectric Point (pI) 5.28

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5N8N STRUCTURAL PROTEIN 02/23/17 Contracted sheath of a Pseudomonas aeruginosa type six secretion system consisting of TssB1 and TssC1 Pseudomonas aeruginosa 3.28 ELECTRON MICROSCOPY 93.7

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 111 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000083 (1225 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6088
Search term: tssC

Human Homologs

References

No references are associated with this feature.