Pseudomonas protegens Pf-5, PFL_6209

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6209
Name
Replicon chromosome
Genomic location 7049182 - 7050408 (+ strand)

Cross-References

RefSeq YP_263267.1
GI 70733492
Entrez 3480579
INSDC AAY95397.1
NCBI Locus Tag PFL_6209
UniParc UPI000054E2F7
UniProtKB Acc Q4K3B6
UniProtKB ID Q4K3B6_PSEF5
UniRef100 UniRef100_Q4K3B6
UniRef50 UniRef50_Q9I739
UniRef90 UniRef90_Q4K3B6

Product

Feature Type CDS
Coding Frame 1
Product Name
PAAR motif containing protein
Synonyms
Evidence for Translation
Charge (pH 7) -2.62
Kyte-Doolittle Hydrophobicity Value 0.339
Molecular Weight (kDa) 41692.9
Isoelectric Point (pI) 6.26

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6B12 ANTIMICROBIAL PROTEIN 09/15/17 Structure of Tne2 in complex with Tni2 Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) 1.71 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 31 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000092 (1670 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6209

Human Homologs

References

No references are associated with this feature.