Pseudomonas protegens CHA0, PFLCHA0_c00260 (rimN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c00260
Name
rimN
Replicon chromosome
Genomic location 27258 - 27815 (+ strand)

Cross-References

RefSeq YP_007997337.1
GI 501677511
Entrez 15557942
NCBI Locus Tag PFLCHA0_c00260

Product

Feature Type CDS
Coding Frame 1
Product Name
tRNA threonylcarbamoyladenosine biosynthesis protein RimN
Synonyms
Evidence for Translation
Charge (pH 7) 0.89
Kyte-Doolittle Hydrophobicity Value -0.153
Molecular Weight (kDa) 20.6
Isoelectric Point (pI) 7.58

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 637 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000022 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c00260
Search term: rimN

Human Homologs

Ensembl 110, assembly GRCh38.p14
yrdC N6-threonylcarbamoyltransferase domain containing [Source:HGNC Symbol;Acc:HGNC:28905]
E-value: 6.7e-10
Percent Identity: 27.7

References

No references are associated with this feature.