Pseudomonas protegens CHA0, PFLCHA0_c13650 (oprD4)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest |
| Locus Tag |
PFLCHA0_c13650
|
| Name |
oprD4
|
| Replicon | chromosome |
| Genomic location | 1520611 - 1521831 (- strand) |
Cross-References
| RefSeq | YP_007998659.1 |
| GI | 501678833 |
| EC Number | 3.4.21.- |
| Entrez | 15559281 |
| NCBI Locus Tag | PFLCHA0_c13650 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
porin D
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 0.96 |
| Kyte-Doolittle Hydrophobicity Value | -0.446 |
| Molecular Weight (kDa) | 44712.5 |
| Isoelectric Point (pI) | 7.77 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 3JTY | TRANSPORT PROTEIN | 09/14/09 | Crystal structure of a BenF-like porin from Pseudomonas fluorescens Pf-5 | Pseudomonas fluorescens Pf-5 | 2.58 | X-RAY DIFFRACTION | 99.0 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 16 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000239 (1158 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c13650
Search term: oprD4
Search term: porin D
|
Human Homologs
References
No references are associated with this feature.