Pseudomonas protegens CHA0, PFLCHA0_c14760 (oprD5)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c14760
Name
oprD5
Replicon chromosome
Genomic location 1639336 - 1640628 (- strand)

Cross-References

RefSeq YP_007998769.1
GI 501678943
EC Number 3.4.21.-
Entrez 15559392
NCBI Locus Tag PFLCHA0_c14760

Product

Feature Type CDS
Coding Frame 1
Product Name
porin D
Synonyms
Evidence for Translation
Charge (pH 7) -1.31
Kyte-Doolittle Hydrophobicity Value -0.453
Molecular Weight (kDa) 47.1
Isoelectric Point (pI) 6.65

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 23 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000729 (839 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c14760
Search term: oprD5
Search term: porin D

Human Homologs

References

No references are associated with this feature.