Pseudomonas protegens CHA0, PFLCHA0_c14840 (algU)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c14840
Name
algU
Replicon chromosome
Genomic location 1647706 - 1648287 (+ strand)

Cross-References

RefSeq YP_007998777.1
GI 501678951
Entrez 15559400
NCBI Locus Tag PFLCHA0_c14840

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma-H factor AlgU
Synonyms
Evidence for Translation
Charge (pH 7) -5.83
Kyte-Doolittle Hydrophobicity Value -0.508
Molecular Weight (kDa) 22.2
Isoelectric Point (pI) 5.16

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6IN7 TRANSCRIPTION 10/24/18 Crystal structure of AlgU in complex with MucA(cyto) Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 1.96 X-RAY DIFFRACTION 91.1

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 494 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000736 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c14840
Search term: algU

Human Homologs

References

No references are associated with this feature.