Pseudomonas protegens CHA0, PFLCHA0_c57600 (rsmE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c57600
Name
rsmE
Replicon chromosome
Genomic location 6407700 - 6408419 (+ strand)

Cross-References

RefSeq YP_008002992.1
GI 501683166
EC Number 2.1.1.193
Entrez 15563677
NCBI Locus Tag PFLCHA0_c57600

Product

Feature Type CDS
Coding Frame 1
Product Name
ribosomal RNA small subunit methyltransferase E
Synonyms
Evidence for Translation
Charge (pH 7) -0.16
Kyte-Doolittle Hydrophobicity Value -0.102
Molecular Weight (kDa) 26329.0
Isoelectric Point (pI) 6.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 535 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000410 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c57600
Search term: rsmE

Human Homologs

References

No references are associated with this feature.