Pseudomonas poae RE_1-1-14, H045_18810

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas poae RE*1-1-14
GCF_000336465.1|latest
Locus Tag
H045_18810
Name
Replicon chromosome
Genomic location 4299898 - 4300563 (+ strand)

Cross-References

RefSeq YP_007399320.1
GI 447918752
Entrez 14505552
INSDC AGE27824.1
NCBI Locus Tag H045_18810
UniParc UPI0002A78FEF
UniProtKB Acc M4K4A3
UniProtKB ID M4K4A3_9PSED
UniRef100 UniRef100_M4K4A3
UniRef50 UniRef50_A0A0B7DFE2
UniRef90 UniRef90_A0A0D0TUJ0

Product

Feature Type CDS
Coding Frame 1
Product Name
alginate lyase
Synonyms
Evidence for Translation
Charge (pH 7) -0.53
Kyte-Doolittle Hydrophobicity Value -0.513
Molecular Weight (kDa) 24.7
Isoelectric Point (pI) 6.55

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 24 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001125 (777 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H045_18810
Search term: alginate lyase

Human Homologs

References

No references are associated with this feature.