Pseudomonas denitrificans ATCC 13867, H681_00010

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas denitrificans ATCC 13867
GCF_000349845.1|latest
Locus Tag
H681_00010
Name
Replicon chromosome
Genomic location 1563 - 2669 (+ strand)

Cross-References

RefSeq YP_007655424.1
GI 472323178
EC Number 2.7.7.7
Entrez 14994142
NCBI Locus Tag H681_00010

Product

Feature Type CDS
Coding Frame 1
Product Name
DNA polymerase III subunit beta
Synonyms
Evidence for Translation
Charge (pH 7) -10.84
Kyte-Doolittle Hydrophobicity Value -0.102
Molecular Weight (kDa) 40535.1
Isoelectric Point (pI) 4.82

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6AMS TRANSFERASE 08/11/17 Crystal structure of the DNA polymerase III subunit beta from Pseudomonas aeruginosa Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 2.39 X-RAY DIFFRACTION 92.9
4TR8 DNA BINDING PROTEIN 06/15/14 Crystal structure of DNA polymerase sliding clamp from Pseudomonas aeruginosa Pseudomonas aeruginosa HB15 1.8 X-RAY DIFFRACTION 92.9
6PTH TRANSFERASE/ANTIBIOTIC 07/15/19 Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Pseudomonas aeruginosa bound to griselimycin Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SYNTHETIC CONSTRUCT 3.05 X-RAY DIFFRACTION 92.9
4TSZ TRANSFERASE 06/19/14 Crystal structure of DNA polymerase sliding clamp from Pseudomonas aeruginosa with ligand Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT 2 X-RAY DIFFRACTION 92.9

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 587 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000002 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H681_00010

Human Homologs

References

No references are associated with this feature.