Motif View

Internal ID 17655653
Source Database TransTermHP TERM 87
Feature Type terminator
Name
Rho-independent transcription terminator TERM 87
Sequence CCTCGGCCTGGGCGCAGGCCGAGG
Look for more occurrences
Start 438955
End 438978
Strand +
Genomic Context Located within gene [PA0397]
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGTAGGCCAGCGGCT(5' tail) CCTCGGCCTG(5' stem) GGCG(loop) CAGGCCGAGG(3' stem) TTTCCAGTTGCAGGG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685