Motif View

Internal ID 17655680
Source Database TransTermHP TERM 135
Feature Type terminator
Name
Rho-independent transcription terminator TERM 135
Sequence CCCCCGGCCTGAAAAACCGGGGG
Look for more occurrences
Start 634340
End 634362
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCGGCAAAGAAAAA(5' tail) CCCCCGG(5' stem) TTTTTCAGG(loop) CCGGGGG(3' stem) TTCGTTCGTCACTCG(3' tail). Confidence: 100. opp_overlap 634340, overlap 634334

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685