Motif View

Internal ID 17655756
Source Database TransTermHP TERM 242
Feature Type terminator
Name
Rho-independent transcription terminator TERM 242
Sequence GGCGCGGCAACCCCGCGCC
Look for more occurrences
Start 990844
End 990862
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCTGACAGGCGAAA(5' tail) GGCGCGG(5' stem) CAACC(loop) CCGCGCC(3' stem) TTTTGTCGTTTTTGA(3' tail). Confidence: 100. opp_overlap 990844, overlap 990837 990836

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685