Motif View

Internal ID 17655759
Source Database TransTermHP TERM 245
Feature Type terminator
Name
Rho-independent transcription terminator TERM 245
Sequence GGCCCGCCTTTTCGGCGGGCC
Look for more occurrences
Start 993366
End 993386
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTTCGGCCGTTCCG(5' tail) GGCCCGCC(5' stem) TTTTC(loop) GGCGGGCC(3' stem) TTTGCATTTCCGGGA(3' tail). Confidence: 91. overlap 993347 993346

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685