Motif View

Internal ID 17655763
Source Database TransTermHP TERM 249
Feature Type terminator
Name
Rho-independent transcription terminator TERM 249
Sequence ACGCGCCCAATCGGGCGCGC
Look for more occurrences
Start 1001937
End 1001956
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTCCGCTGCAAAAAA(5' tail) GCGCGCCC(5' stem) GATT(loop) GGGCGCGT(3' stem) TTTTTTGCGCGTTTC(3' tail). Confidence: 100. opp_overlap 1001925 1001938, overlap 1001938

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685