Motif View

Internal ID 17655764
Source Database TransTermHP TERM 250
Feature Type terminator
Name
Rho-independent transcription terminator TERM 250
Sequence CGCGCCCGATTGGGCGCG
Look for more occurrences
Start 1001938
End 1001955
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCGCTGCAAAAAAG(5' tail) CGCGCCC(5' stem) GATT(loop) GGGCGCG(3' stem) TTTTTTTGCGCGTTT(3' tail). Confidence: 100. opp_overlap 1001937 1001938, overlap 1001925

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685