Motif View

Internal ID 17656330
Source Database TransTermHP TERM 1152
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1152
Sequence GCCCTCCGTCTGCGCGTCCCTTCCTGGGGTTCGCAGGCGGAGGGC
Look for more occurrences
Start 4985783
End 4985827
Strand -
Genomic Context Located within gene P35
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCATCATACAAAAAA(5' tail) GCCCTCCGCCTGCGAACCCC(5' stem) AGGAA(loop) GGGACGCGCAGACGGAGGGC(3' stem) CGCTCGTTCCGCCGG(3' tail). Confidence: 100. opp_overlap 4985780, overlap 4985808

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685