Motif View

Internal ID 17656569
Source Database TransTermHP TERM 1508
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1508
Sequence GAGGGACACGGCGACCTGCGGTGTCCCTTC
Look for more occurrences
Start 6110903
End 6110932
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCTCTCTACACTCT(5' tail) GA-GGGACACGGCG(5' stem) ACC(loop) TGCGGTGTCCCTTC(3' stem) TTTTTTTCACCGCTC(3' tail). Confidence: 100. gap 1, overlap 6110905

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685