Motif View

Internal ID 17656580
Source Database TransTermHP TERM 1526
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1526
Sequence CAGGACGGCGACCTTCGGGTCGCCGTCCTG
Look for more occurrences
Start 6224530
End 6224559
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGGCCTTTTTATCCA(5' tail) CAGGACGGCGACC(5' stem) TTCG(loop) GGTCGCCGTCCTG(3' stem) CTTTTTGGCGCGGCA(3' tail). Confidence: 100. opp_overlap 6224535, overlap 6224529

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685