Motif View

Internal ID 17656581
Source Database TransTermHP TERM 1527
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1527
Sequence CCGCGCCTTCGAGCGCGG
Look for more occurrences
Start 6224854
End 6224871
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGGGAATAAAAAAA(5' tail) CCGCGC(5' stem) TCGAAG(loop) GCGCGG(3' stem) CTCTTTTCGTTGTCG(3' tail). Confidence: 100. opp_overlap 6224854 6224853 6224851

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685