Motif View

Internal ID 17656665
Source Database TransTermHP TERM 127
Feature Type terminator
Name
Rho-independent transcription terminator TERM 127
Sequence CCCCGCCTTTTGGGCGGGG
Look for more occurrences
Start 596941
End 596959
Strand -
Genomic Context Located within gene [PA14_06875]
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TAGAGGTCTGCAAAA(5' tail) CCCCGCCC(5' stem) AAA(loop) AGGCGGGG(3' stem) TTTTTTATTGCCCGA(3' tail). Confidence: 90. opp_overlap 596941, overlap 596930 596928

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685