Motif View

Internal ID 17656669
Source Database TransTermHP TERM 133
Feature Type terminator
Name
Rho-independent transcription terminator TERM 133
Sequence TGAAAAAGCCCCGCTTCGGCGGGGCTTTTTCG
Look for more occurrences
Start 613638
End 613669
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGAGCCTGCCGGAAA(5' tail) CGAAAAAGCCCCGC(5' stem) CGAA(loop) GCGGGGCTTTTTCA(3' stem) TCGCGCGGTCGCTCA(3' tail). Confidence: 100. opp_overlap 613645, overlap 613639 613645

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685