Motif View

Internal ID 17657229
Source Database TransTermHP TERM 1039
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1039
Sequence CCCGCCGAACGGCGGG
Look for more occurrences
Start 4604835
End 4604850
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGAAAAACAGAAAA(5' tail) CCCGCC(5' stem) GAAC(loop) GGCGGG(3' stem) TTTTTTGTGCATTCA(3' tail). Confidence: 100. opp_overlap 4604835 4604828, overlap 4604828

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685