Motif View

Internal ID 17686002
Source Database TransTermHP TERM 819
Feature Type terminator
Name
Rho-independent transcription terminator TERM 819
Sequence CCCCGTCCATGTGACGGGG
Look for more occurrences
Start 3952699
End 3952717
Strand +
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCGCACTAAAAAAA(5' tail) CCCCGTC(5' stem) CATGT(loop) GACGGGG(3' stem) TTTTTTATGGGTGAA(3' tail). Confidence: 100. opp_overlap 3952699

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685