Pseudomonas syringae pv. syringae B728a

Strain Overview
Organism Name Pseudomonas syringae pv. syringae B728a - Assembly GCF_000012245.1
Species Pseudomonas syringae pv. syringae
Strain B728a
Description/Title Sample from Pseudomonas syringae pv. syringae B728a
Annotated Genes 5220
Partial Genes
Host Information
Host Species Disease leaf-spot disease
Geographic Location
Location Name USA: Wisconsin
Isolation Source snap bean leaflet

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02604347
NCBI Taxonomy ID 205918
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas syringae pv. syringae B728a chromosome, complete genome.

Annotated Features

Feature Count
gene 5173
CDS 5089
pseudo 94
tRNA 64
rRNA 16
misc_RNA 2
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2210
Cytoplasmic Membrane 1180
Periplasmic 176
Outer Membrane 105
Extracellular 76
Unknown 1216
Unknown (This protein may have multiple localization sites) 126
Flagellar 18
Fimbrial 8
T3SS 2

Replicons

Name Length GC
Pseudomonas syringae pv. syringae B728a chromosome, complete genome. 6093698 bp 59.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs