Pseudomonas fluorescens Pf0-1

Strain Overview
Organism Name Pseudomonas fluorescens Pf0-1
Species Pseudomonas fluorescens
Strain Pf0-1
Description/Title Sample from Pseudomonas fluorescens Pf0-1
Annotated Genes 5829
Partial Genes
Host Information
Geographic Location
Location Name USA: Massachusetts, Sherborn
Isolation Source agricultural loam
Sample Provider
Name
E-mail
Institution
Date Collected 1988

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pfluorescens 2
nuoD
2		 recA
2		 ileS
2		 gyrB
2		 glnS
2		 rpoD
2		 rpoB
2
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000012445.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02598267
NCBI Taxonomy ID 205922
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas fluorescens Pf0-1 chromosome, complete genome.

Annotated Features

Feature Count
gene 5817
CDS 5722
tRNA 73
rRNA 19
pseudo 12
misc_RNA 2
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2525
Cytoplasmic Membrane 1345
Periplasmic 184
Outer Membrane 131
Extracellular 71
Unknown 1328
Unknown (This protein may have multiple localization sites) 138
Flagellar 18
Fimbrial 4

Replicons

Name Length GC
Pseudomonas fluorescens Pf0-1 chromosome, complete genome. 6438405 bp 60.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs