| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas stutzeri RCH2 |
| Species | Pseudomonas stutzeri |
| Strain | RCH2 |
| Description/Title | MIGS Cultured Bacterial/Archaeal sample from Pseudomonas stutzeri RCH2 |
| Annotated Genes | 4404 |
| Partial Genes |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | USA: WA, Hanford 100 Area site |
| Isolation Source | Cr-contaminated aquifer |
| Environmental Feature (?) | not provided; submitted under MIGS 2.1 |
| Environmental Material (?) | not provided; submitted under MIGS 2.1 |
| Sample Provider | |
|---|---|
| Name | Susan Hua |
| shua@lbl.gov | |
| Institution | Joint Genome Institute |
| Date Collected | Missing |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02232046 |
| NCBI Taxonomy ID | 644801 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 4347 |
| CDS | 4264 |
| tRNA | 59 |
| pseudo | 57 |
| ncRNA | 12 |
| rRNA | 12 |
| Localization | Count |
|---|---|
| Cytoplasmic | 1920 |
| Cytoplasmic Membrane | 1065 |
| Periplasmic | 118 |
| Outer Membrane | 88 |
| Extracellular | 44 |
| Unknown | 908 |
| Unknown (This protein may have multiple localization sites) | 121 |
| Flagellar | 33 |
| Fimbrial | 5 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas stutzeri RCH2 chromosome, complete genome. | 4575057 bp | 62.5% |
Replicon details
|
| Pseudomonas stutzeri RCH2 plasmid pPSEST01, complete sequence. | 12763 bp | 53.9% |
Replicon details
|
| Pseudomonas stutzeri RCH2 plasmid pPSEST02, complete sequence. | 9865 bp | 60.3% |
Replicon details
|
| Pseudomonas stutzeri RCH2 plasmid pPSEST03, complete sequence. | 2804 bp | 61.8% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |