Pseudomonas sp. UW4

Strain Overview
Organism Name Pseudomonas sp. UW4
Species Pseudomonas sp.
Strain UW4
Description/Title Sample from Pseudomonas sp. UW4
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Annotated Genes 5537
Partial Genes
Cross-References
NCBI BioSample Accession SAMN02604261
NCBI Taxonomy ID 1207075
NCBI Bioprojects
Assembly DB
RefSeq
Assembly Accession
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas sp. UW4 chromosome, complete genome.

Annotated Features

Feature Count
gene 5537
CDS 5423
tRNA 72
rRNA 22

Subcellular Localization

Localization Count
Cytoplasmic 2505
Cytoplasmic Membrane 1257
Periplasmic 177
Outer Membrane 113
Extracellular 41
Unknown 1205
Unknown (This protein may have multiple localization sites) 125
Flagellar 18
Fimbrial 4
T3SS 2
Sample Provider
Name
E-mail
Institution
Date Collected
Geographic Location
Location Name Canada: Ontario, University of Waterloo
Isolation Source rhizosphere
Host Information
Host Species Taxonomic Name Phragmites australis
Host Species Common Name common reed
Host Species Taxonomy ID 29695

Replicons

Name Length GC
Pseudomonas sp. UW4 chromosome, complete genome. 6183388 bp 60.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs

Download Intergenic Region Annotations

File also contains gene annotations

GTF