Strain Overview | |
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Organism Name | Pseudomonas sp. UW4 |
Species | Pseudomonas sp. |
Strain | UW4 |
Description/Title | Sample from Pseudomonas sp. UW4 |
Annotated Genes | 5537 |
Partial Genes |
Host Information | |
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Host Species Taxonomic Name | Phragmites australis |
Host Species Common Name | common reed |
Host Species Taxonomy ID | 29695 |
Geographic Location | |
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Location Name | Canada: Ontario, University of Waterloo |
Isolation Source | rhizosphere |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02604261 |
NCBI Taxonomy ID | 1207075 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas sp. UW4 chromosome, complete genome. |
Feature | Count |
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gene | 5537 |
CDS | 5423 |
tRNA | 72 |
rRNA | 22 |
Localization | Count |
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Cytoplasmic | 2505 |
Cytoplasmic Membrane | 1257 |
Periplasmic | 177 |
Outer Membrane | 113 |
Extracellular | 41 |
Unknown | 1205 |
Unknown (This protein may have multiple localization sites) | 125 |
Flagellar | 18 |
Fimbrial | 4 |
T3SS | 2 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas sp. UW4 chromosome, complete genome. | 6183388 bp | 60.1% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |