Pseudomonas aeruginosa PAO1, PA0095

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0033103 protein secretion by the type VI secretion system
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
21325275 Reviewed by curator
Cellular Component GO:0033104 type VI protein secretion system complex
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
21325275 Reviewed by curator

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF04717 Type VI secretion system/phage-baseplate injector OB domain IPR006531 Gp5/Type VI secretion system Vgr protein, OB-fold domain 386 453 6.5E-15
Pfam PF06715 Gp5 C-terminal repeat (3 copies) IPR010609 Gp5, C-terminal 529 552 2.7E-5
Pfam PF05954 Phage tail baseplate hub (GPD) - - 29 329 3.9E-106
SUPERFAMILY SSF69349 Phage fibre proteins - - 442 608 8.63E-49
FunFam G3DSA:2.40.50.230:FF:000001 Type VI secretion protein VgrG - - 355 457 5.3E-62
SUPERFAMILY SSF69349 Phage fibre proteins - - 580 723 8.63E-24
PANTHER PTHR32305 - - - 15 662 5.9E-99
SUPERFAMILY SSF69279 Phage tail proteins - - 11 184 7.65E-64
Pfam PF06715 Gp5 C-terminal repeat (3 copies) IPR010609 Gp5, C-terminal 633 656 6.1E-5
SUPERFAMILY SSF69279 Phage tail proteins - - 189 363 5.1E-37
NCBIfam TIGR03361 JCVI: type VI secretion system tip protein TssI/VgrG N-terminal domain IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset 11 524 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 614 669 -
FunFam G3DSA:4.10.220.110:FF:000001 VgrG1 - - 224 286 4.7E-31
Gene3D G3DSA:2.40.50.230 - IPR037026 Vgr protein, OB-fold domain superfamily 355 457 6.5E-46
Gene3D G3DSA:2.30.110.50 - - - 15 333 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 614 678 -
Gene3D G3DSA:4.10.220.110 - - - 224 286 0.0
NCBIfam TIGR01646 JCVI: type VI secretion system tip protein VgrG IPR006533 Type VI secretion system, RhsGE-associated Vgr protein 22 506 0.0
Gene3D G3DSA:3.55.50.10 - - - 98 189 0.0
FunFam G3DSA:3.55.50.10:FF:000001 Actin cross-linking toxin VgrG1 - - 98 189 1.8E-44
SUPERFAMILY SSF69255 gp5 N-terminal domain-like - - 365 452 1.36E-35

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.