Pseudomonas aeruginosa PAO1, PA0133 (bauR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009896 positive regulation of catabolic process
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 21622750 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class
Carbon compound catabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Beta-alanine catabolism ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 15 103 1.8E-20
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 17 76 3.4E-16
FunFam G3DSA:1.10.10.10:FF:000511 LysR family transcriptional regulator - - 15 102 2.3E-47
Gene3D G3DSA:3.40.190.290 - - - 106 304 8.5E-12
PANTHER PTHR30126 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 14 303 5.0E-51
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 16 101 3.44E-18
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 100 302 4.1E-26
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 97 302 4.71E-24
CDD cd05466 PBP2_LTTR_substrate - - 106 302 2.23612E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.