Pseudomonas aeruginosa PAO1, PA0225 (erfA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
IDA
Inferred from Direct Assay
ECO:0000096
electrophoretic mobility shift assay evidence
31925438 Reviewed by curator
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.260.40
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd02209 cupin_XRE_C - - 90 176 1.18081E-24
SUPERFAMILY SSF47413 lambda repressor-like DNA-binding domains IPR010982 Lambda repressor-like, DNA-binding domain superfamily 3 66 2.95E-18
CDD cd00093 HTH_XRE IPR001387 Cro/C1-type helix-turn-helix domain 4 42 3.04124E-10
PANTHER PTHR46797 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 3 177 1.0E-31
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 67 175 5.63E-24
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 67 176 3.6E-19
Pfam PF07883 Cupin domain IPR013096 Cupin 2, conserved barrel 118 174 1.4E-13
SMART SM00530 mbf_short4 IPR001387 Cro/C1-type helix-turn-helix domain 4 59 2.2E-17
Gene3D G3DSA:1.10.260.40 - IPR010982 Lambda repressor-like, DNA-binding domain superfamily 1 66 4.1E-19
Pfam PF01381 Helix-turn-helix IPR001387 Cro/C1-type helix-turn-helix domain 5 59 1.6E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.